TSS: Hg 101678.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=6827 |entrez_id=55357 |gc_percent=0.402985 |gene_alias=PARIS-1|PARIS1|TBC1D2A |gene_description=TBC1 domain family member 2 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
|PARIS1= | |||
|TBC1D2A= | |||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance= | |||
|distance_to_tss=6827 | |distance_to_tss=6827 | ||
|end=98248909 | |||
|entrez_id=55357 | |entrez_id=55357 | ||
|gc_percent=0.402985 | |gc_percent=0.402985 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_018421 | |nearest_refseq=NM_018421 | ||
|nearest_unigene=Hs.371016 | |nearest_unigene=Hs.371016 | ||
|num_trans=0 | |||
|species=human | |||
|start=98248879 | |||
|strand=- | |||
|tata_box="-27(CTGCTTTTAAGG,-,0.00),-25(GCTTTTAAGGAT,+,0.00)" | |tata_box="-27(CTGCTTTTAAGG,-,0.00),-25(GCTTTTAAGGAT,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101678.1 | |tss_id=hg_101678.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:53, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 6827 |
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| Nearest PromoterID: | NM_001267571 |
| Entrez ID: | 55357 |
| Nearest Unigene: | Hs.371016 |
| Nearest Refseq: | NM_018421 |
| Nearest Ensembl: | ENSG00000095383 |
| Gene Name: | TBC1D2 |
| Gene Alias: | PARIS-1 |
| Gene Description: | TBC1 domain family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.402985 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-27(CTGCTTTTAAGG,-,0.00),-25(GCTTTTAAGGAT,+,0.00)" |