TSS: Rfmm 34717.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=intron (ENSMUST00000151903.8, intron 1 of 5) |ccre_category=pELS |ccre_description=pELS (EM10D2729358,EM10E1124286) |chr=chr4 |cpg_percent=0.000000 |...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=intron (ENSMUST00000151903.8, intron 1 of 5)
|annotation=intron (XR_390347.2, intron 1 of 5)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS (EM10D2729358,EM10E1124286)
|ccre_description=pELS (EM10D2729358,EM10E1124286)
|chr=chr4
|chr=chr4
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-intron (ENSMUST00000030015.6, intron 1 of 4)
|detailed_annotation=-intron (NM_001347095.1, intron 1 of 4)
|distance=191
|distance=191
|distance_to_tss=305
|distance_to_tss=310
|end=46389123
|end=46389123
|entrez_id=ENSMUSG00000028331
|entrez_id=Trmo
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.400000
|gc_percent=0.400000
Line 15: Line 15:
|gene_description=
|gene_description=
|gene_id=
|gene_id=
|gene_name=
|gene_name=Trmo
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000151903.8
|nearest_promoter_id=NM_029086.2
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000086563
|nearest_unigene=XM_017320423
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=mouse
|species=mouse
|start=46389103
|start=46389104
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 07:15, 26 June 2023

Basic information about the TSS


TSS ID:rfmm_34717.1
Species:mouse
Chr:chr4
Start:46389104
End:46389123
Strand:-
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:pELS (EM10D2729358,EM10E1124286)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF271562:191
MA507139:191
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Trmo
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:310
    Nearest PromoterID:NM_029086.2
    Entrez ID:Trmo
    Nearest Unigene:XM_017320423
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Trmo
    Gene Alias:
    Gene Type:
    CpG%:0.000000
    GC%:0.400000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):