TSS: Hg 101711.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=-215628 |entrez_id=100996569 |gc_percent=0.457711 |gene_alias=- |gene_description="non-protein coding RNA, associated with MAP kina...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance= | |||
|distance_to_tss=-215628 | |distance_to_tss=-215628 | ||
|end=99590892 | |||
|entrez_id=100996569 | |entrez_id=100996569 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NR_102270 | |nearest_refseq=NR_102270 | ||
|nearest_unigene=Hs.745280 | |nearest_unigene=Hs.745280 | ||
|num_trans=0 | |||
|species=human | |||
|start=99590878 | |||
|strand=- | |||
|tata_box="-35(CTGCCTTAAAGG,-,0.00),-34(TGCCTTAAAGGC,-,0.00)" | |tata_box="-35(CTGCCTTAAAGG,-,0.00),-34(TGCCTTAAAGGC,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101711.1 | |tss_id=hg_101711.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:55, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -215628 |
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| Nearest PromoterID: | NR_102271 |
| Entrez ID: | 100996569 |
| Nearest Unigene: | Hs.745280 |
| Nearest Refseq: | NR_102270 |
| Nearest Ensembl: | ENSG00000271086 |
| Gene Name: | NAMA |
| Gene Alias: | - |
| Gene Description: | "non-protein coding RNA, associated with MAP kinase pathway and growth arrest" |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(CTGCCTTAAAGG,-,0.00),-34(TGCCTTAAAGGC,-,0.00)" |