TSS: Hg 101817.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-64887 |entrez_id=19 |gc_percent=0.462687 |gene_alias=ABC-1|ABC1|CERP|HDLDT1|TGD |gene_description=ATP binding cassette subfamil...") |
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{{TSSDetail | {{TSSDetail | ||
|ABC1= | |||
|CERP= | |||
|HDLDT1= | |||
|TGD= | |||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=-64887 | |distance_to_tss=-64887 | ||
|end=104993135 | |||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| Line 12: | Line 19: | ||
|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
|num_trans=0 | |||
|species=human | |||
|start=104993131 | |||
|strand=- | |||
|tata_box="-36(TGCCTTATAAGA,-,0.00),-34(CCTTATAAGAAG,+,0.00),-7(GTCTCTAAGAGC,-,0.00)" | |tata_box="-36(TGCCTTATAAGA,-,0.00),-34(CCTTATAAGAAG,+,0.00),-7(GTCTCTAAGAGC,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101817.1 | |tss_id=hg_101817.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 18:59, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -64887 |
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| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ABCA1 |
| Gene Alias: | ABC-1 |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-36(TGCCTTATAAGA,-,0.00),-34(CCTTATAAGAAG,+,0.00),-7(GTCTCTAAGAGC,-,0.00)" |