TSS: Hg 101826.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-50254 |entrez_id=23446 |gc_percent=0.378109 |gene_alias=CD92|CDW92|CHTL1|CTL1 |gene_description=solute carrier family 44 member...") |
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{{TSSDetail | {{TSSDetail | ||
|CDW92= | |||
|CHTL1= | |||
|CTL1= | |||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=-50254 | |distance_to_tss=-50254 | ||
|end=105194353 | |||
|entrez_id=23446 | |entrez_id=23446 | ||
|gc_percent=0.378109 | |gc_percent=0.378109 | ||
| Line 12: | Line 18: | ||
|nearest_refseq=NM_022109 | |nearest_refseq=NM_022109 | ||
|nearest_unigene=Hs.573495 | |nearest_unigene=Hs.573495 | ||
|num_trans=0 | |||
|species=human | |||
|start=105194348 | |||
|strand=- | |||
|tata_box="-33(GTCTATAAAAGG,-,0.00),-7(TTTTTTATGGTC,+,0.00)" | |tata_box="-33(GTCTATAAAAGG,-,0.00),-7(TTTTTTATGGTC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101826.1 | |tss_id=hg_101826.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:00, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -50254 |
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| Nearest PromoterID: | NM_001330731 |
| Entrez ID: | 23446 |
| Nearest Unigene: | Hs.573495 |
| Nearest Refseq: | NM_022109 |
| Nearest Ensembl: | ENSG00000070214 |
| Gene Name: | SLC44A1 |
| Gene Alias: | CD92 |
| Gene Description: | solute carrier family 44 member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.378109 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(GTCTATAAAAGG,-,0.00),-7(TTTTTTATGGTC,+,0.00)" |