TSS: Rfmm 4928.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000185421.2) |ccre_category=PLS |ccre_description=PLS (EM10D1079762,EM10E0446527) |chr=chr1 |cpg_percent=0.000000 |detailed_an...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_015525.1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EM10D1079762,EM10E0446527) | |ccre_description=PLS (EM10D1079762,EM10E0446527) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NR_015525.1) | ||
|distance=111 | |distance=111 | ||
|distance_to_tss=- | |distance_to_tss=-44 | ||
|end=92878453 | |end=92878453 | ||
|entrez_id= | |entrez_id=Gpr35 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.548387 | |gc_percent=0.548387 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=100037260 | |gene_id=100037260 | ||
|gene_name= | |gene_name=Gpr35 | ||
|gene_source=MGI:3702484 | |gene_source=MGI:3702484 | ||
|gene_symbol=9430060I03Rik | |gene_symbol=9430060I03Rik | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:3702484 | |hgnc_mgi_id=MGI:3702484 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XM_011248053.4 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_001104529 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=92878423 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 10:58, 26 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS (EM10D1079762,EM10E0446527) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -44 |
|---|---|
| Nearest PromoterID: | XM_011248053.4 |
| Entrez ID: | Gpr35 |
| Nearest Unigene: | NM_001104529 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Gpr35 |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.548387 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.