TSS: Rfmm 50860.1: Difference between revisions
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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000201715.2) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EM10D1960654,EM10E0806076) |chr=chr5 |cpg_percent=0.000000...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (XM_030254162.2, intron 10 of 31) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EM10D1960654,EM10E0806076) | |ccre_description=pELS,CTCF-bound (EM10D1960654,EM10E0806076) | ||
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-intron (NM_001080746.2, intron 12 of 34) | ||
|distance=-18 | |distance=-18 | ||
|distance_to_tss= | |distance_to_tss=-41091 | ||
|end=134299572 | |end=134299572 | ||
|entrez_id= | |entrez_id=Ncf1 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id=14886 | |gene_id=14886 | ||
|gene_name= | |gene_name=Ncf1 | ||
|gene_source=MGI:1202722 MGI:5663618 | |gene_source=MGI:1202722 MGI:5663618 | ||
|gene_symbol=Gm43481 Gtf2i | |gene_symbol=Gm43481 Gtf2i | ||
|gene_synonyms=6030441I21Rik BAP-135 TFII-I | |gene_synonyms=6030441I21Rik BAP-135 TFII-I | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1202722 MGI:5663618 | |hgnc_mgi_id=MGI:1202722 MGI:5663618 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_104383.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NR_104383 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=134299569 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 11:22, 26 June 2023
Basic information about the TSS
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| Source datasets | ||||||||||||||
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| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | pELS,CTCF-bound (EM10D1960654,EM10E0806076) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -41091 |
|---|---|
| Nearest PromoterID: | NR_104383.1 |
| Entrez ID: | Ncf1 |
| Nearest Unigene: | NR_104383 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Ncf1 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.