TSS: Hg 101895.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|PTPH1= | |||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=-3674 | |distance_to_tss=-3674 | ||
|end=109421465 | |||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
|num_trans=0 | |||
|species=human | |||
|start=109421449 | |||
|strand=- | |||
|tata_box="-60(GGCTATTTATAG,-,0.00),-58(CTATTTATAGGT,+,0.00)" | |tata_box="-60(GGCTATTTATAG,-,0.00),-58(CTATTTATAGGT,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101895.1 | |tss_id=hg_101895.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:03, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -3674 |
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| Nearest PromoterID: | NR_026918 |
| Entrez ID: | 5774 |
| Nearest Unigene: | Hs.436429 |
| Nearest Refseq: | NM_002829 |
| Nearest Ensembl: | ENSG00000070159 |
| Gene Name: | PTPN3 |
| Gene Alias: | PTP-H1 |
| Gene Description: | "protein tyrosine phosphatase, non-receptor type 3" |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-60(GGCTATTTATAG,-,0.00),-58(CTATTTATAGGT,+,0.00)" |