TSS: Hg 101896.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-3696 |entrez_id=5774 |gc_percent=0.527363 |gene_alias=PTP-H1|PTPH1 |gene_description="protein tyrosine phosphatase, non-recept...") |
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{{TSSDetail | {{TSSDetail | ||
|PTPH1= | |||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance= | |||
|distance_to_tss=-3696 | |distance_to_tss=-3696 | ||
|end=109421490 | |||
|entrez_id=5774 | |entrez_id=5774 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
Line 12: | Line 16: | ||
|nearest_refseq=NM_002829 | |nearest_refseq=NM_002829 | ||
|nearest_unigene=Hs.436429 | |nearest_unigene=Hs.436429 | ||
|num_trans=0 | |||
|species=human | |||
|start=109421468 | |||
|strand=- | |||
|tata_box="-38(GGCTATTTATAG,-,0.00),-36(CTATTTATAGGT,+,0.00)" | |tata_box="-38(GGCTATTTATAG,-,0.00),-36(CTATTTATAGGT,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101896.1 | |tss_id=hg_101896.1 | ||
|tss_score=1 | |||
}} | }} |
Revision as of 19:03, 8 March 2018
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -3696 |
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Nearest PromoterID: | NR_026918 |
Entrez ID: | 5774 |
Nearest Unigene: | Hs.436429 |
Nearest Refseq: | NM_002829 |
Nearest Ensembl: | ENSG00000070159 |
Gene Name: | PTPN3 |
Gene Alias: | PTP-H1 |
Gene Description: | "protein tyrosine phosphatase, non-receptor type 3" |
Gene Type: | protein-coding |
CpG%: | 0.015 |
GC%: | 0.527363 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-38(GGCTATTTATAG,-,0.00),-36(CTATTTATAGGT,+,0.00)" |