TSS: Rfmm 5510.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENSMUST00000112643.2, intron 2 of 5) |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EM10D2287605,EM10E0941922) |chr=chr1 |cpg_percent...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=promoter-TSS (NM_001379355.1) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EM10D2287605,EM10E0941922) | |ccre_description=dELS,CTCF-bound (EM10D2287605,EM10E0941922) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.025641 | |cpg_percent=0.025641 | ||
|detailed_annotation= | |detailed_annotation=-promoter-TSS (NM_001379355.1) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=13 | ||
|end=120186615 | |end=120186615 | ||
|entrez_id= | |entrez_id=Steap3 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.525000 | |gc_percent=0.525000 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=Steap3 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001379355.1 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=NM_001379354 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=120186576 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 12:27, 26 June 2023
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||||
| TSS cluster detected* | ||||||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | dELS,CTCF-bound (EM10D2287605,EM10E0941922) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_001379355.1 |
| Entrez ID: | Steap3 |
| Nearest Unigene: | NM_001379354 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Steap3 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.025641 |
| GC%: | 0.525000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |