TSS: Rfmm 55604.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENSMUST00000031815.12) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EM10D1991482,EM10E0819229) |chr=chr6 |cpg_percent=0.097561...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENSMUST00000031815.12)
|annotation=promoter-TSS (NM_001347152.1)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EM10D1991482,EM10E0819229)
|ccre_description=PLS,CTCF-bound (EM10D1991482,EM10E0819229)
|chr=chr6
|chr=chr6
|cpg_percent=0.097561
|cpg_percent=0.097561
|detailed_annotation=protein_coding-promoter-TSS (ENSMUST00000031815.12)
|detailed_annotation=-promoter-TSS (NM_001347152.1)
|distance=0
|distance=0
|distance_to_tss=-5
|distance_to_tss=23
|end=48372580
|end=48372580
|entrez_id=ENSMUSG00000042810
|entrez_id=Krba1
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.595238
|gc_percent=0.595238
Line 15: Line 15:
|gene_description=
|gene_description=
|gene_id=74869 77827
|gene_id=74869 77827
|gene_name=KRAB-A domain containing 1; RIKEN cDNA 4930447G04 gene
|gene_name=Krba1
|gene_source=MGI:1922119 MGI:1925077
|gene_source=MGI:1922119 MGI:1925077
|gene_symbol=4930447G04Rik Krba1
|gene_symbol=4930447G04Rik Krba1
|gene_synonyms=A930040G15Rik
|gene_synonyms=A930040G15Rik
|gene_type=protein_coding
|gene_type=
|hgnc_mgi_id=MGI:1922119 MGI:1925077
|hgnc_mgi_id=MGI:1922119 MGI:1925077
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000204308.2
|nearest_promoter_id=XM_036152396.1
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000204308
|nearest_unigene=XM_030255671
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=mouse
|species=mouse
|start=48372538
|start=48372539
|strand=+
|strand=+
|tata_box=
|tata_box=

Revision as of 12:34, 26 June 2023

Basic information about the TSS

TSS ID:rfmm_55604.1
Species:mouse
Chr:chr6
Start:48372539
End:48372580
Strand:+
Source datasets
Protocol
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:PLS,CTCF-bound (EM10D1991482,EM10E0819229)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000031815.12:0
ENSMUST00000204308.2:0
ENSMUST00000203371.3:0
AB041543:0
AK158136:0
AK128931:0
GeneID:74869 77827
HGNC/MGI_ID:MGI:1922119 MGI:1925077
UniProt_ID:A0A0N4SVV3 Q6NXZ1
Nearer transcript ids and distances:
    Gene_name:Krba1
    Gene_symbol:4930447G04Rik Krba1
    Gene_synonyms:A930040G15Rik
    Gene_source:MGI:1922119 MGI:1925077



    TATA-Box annotation

    Distance to TSS:23
    Nearest PromoterID:XM_036152396.1
    Entrez ID:Krba1
    Nearest Unigene:XM_030255671
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Krba1
    Gene Alias:
    Gene Type:
    CpG%:0.097561
    GC%:0.595238
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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