TSS: Hg 101998.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=40297 |entrez_id=23392 |gc_percent=0.393035 |gene_alias=ECM29 |gene_description=KIAA0368 |gene_name=KIAA0368 |gene_type=protein-...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=40297 | |distance_to_tss=40297 | ||
|end=111444455 | |||
|entrez_id=23392 | |entrez_id=23392 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NM_001080398 | |nearest_refseq=NM_001080398 | ||
|nearest_unigene=Hs.368255 | |nearest_unigene=Hs.368255 | ||
|num_trans=0 | |||
|species=human | |||
|start=111444441 | |||
|strand=- | |||
|tata_box="-17(ACGTATAAAAAG,-,0.00)" | |tata_box="-17(ACGTATAAAAAG,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101998.1 | |tss_id=hg_101998.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:07, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 40297 |
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| Nearest PromoterID: | NM_001080398 |
| Entrez ID: | 23392 |
| Nearest Unigene: | Hs.368255 |
| Nearest Refseq: | NM_001080398 |
| Nearest Ensembl: | ENSG00000136813 |
| Gene Name: | KIAA0368 |
| Gene Alias: | ECM29 |
| Gene Description: | KIAA0368 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-17(ACGTATAAAAAG,-,0.00)" |