TSS: Hg 102155.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=2527 |entrez_id=80709 |gc_percent=0.507463 |gene_alias=- |gene_description=AT-hook transcription factor |gene_name=AKNA |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=2527 | |distance_to_tss=2527 | ||
|end=114385441 | |||
|entrez_id=80709 | |entrez_id=80709 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NM_030767 | |nearest_refseq=NM_030767 | ||
|nearest_unigene=Hs.494895 | |nearest_unigene=Hs.494895 | ||
|num_trans=0 | |||
|species=human | |||
|start=114385430 | |||
|strand=- | |||
|tata_box="-85(CCCTTTAAAAAG,+,0.00),-85(CCCTTTAAAAAG,-,0.00),-83(CTTTAAAAAGTC,+,0.00)" | |tata_box="-85(CCCTTTAAAAAG,+,0.00),-85(CCCTTTAAAAAG,-,0.00),-83(CTTTAAAAAGTC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102155.1 | |tss_id=hg_102155.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:14, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2527 |
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| Nearest PromoterID: | NM_001317950 |
| Entrez ID: | 80709 |
| Nearest Unigene: | Hs.494895 |
| Nearest Refseq: | NM_030767 |
| Nearest Ensembl: | ENSG00000106948 |
| Gene Name: | AKNA |
| Gene Alias: | - |
| Gene Description: | AT-hook transcription factor |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-85(CCCTTTAAAAAG,+,0.00),-85(CCCTTTAAAAAG,-,0.00),-83(CTTTAAAAAGTC,+,0.00)" |