TSS: Hg 102167.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=-40 |entrez_id=25861 |gc_percent=0.756219 |gene_alias=CIP98|DFNB31|PDZD7B|USH2D|WI |gene_description=whirlin |gene_name=WHRN |ge...") |
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{{TSSDetail | {{TSSDetail | ||
|DFNB31= | |||
|PDZD7B= | |||
|USH2D= | |||
|WI= | |||
|all_trans=NM_001173425:6 NM_015404:6 BC142614:6 ENST00000374057.3:12 uc004bjb.4:12 AK056190:12 BC142684:31 BC014524:37 BC136416:257 ENST00000362057.3:492 uc004biz.5:492 AB040959:492 | |||
|chr=chr9 | |||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=6 | |||
|distance_to_tss=-40 | |distance_to_tss=-40 | ||
|end=114505530 | |||
|entrez_id=25861 | |entrez_id=25861 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
|gene_alias=CIP98|DFNB31|PDZD7B|USH2D|WI | |gene_alias=CIP98|DFNB31|PDZD7B|USH2D|WI | ||
|gene_description=whirlin | |gene_description=whirlin | ||
|gene_name=WHRN | |gene_id=25861 | ||
|gene_name="deafness, autosomal recessive 31" | |||
|gene_source=HGNC:16361 | |||
|gene_symbol=DFNB31 | |||
|gene_synonyms=CIP98 PDZD7B USH2D WHRN | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:16361 | |||
|nearest_ensembl=ENSG00000095397 | |nearest_ensembl=ENSG00000095397 | ||
|nearest_promoter_id=NM_015404 | |nearest_promoter_id=NM_015404 | ||
|nearest_refseq=NM_015404 | |nearest_refseq=NM_015404 | ||
|nearest_unigene=Hs.93836 | |nearest_unigene=Hs.93836 | ||
|num_trans=12 | |||
|species=human | |||
|start=114505461 | |||
|strand=- | |||
|transcript_name=NM_001173425 NM_015404 BC142614 | |||
|tss_classification=yes | |||
|tss_id=hg_102167.1 | |tss_id=hg_102167.1 | ||
|tss_score=1 | |||
|uniprot_id=Q9P202 | |||
}} | }} | ||
Revision as of 19:14, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -40 |
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| Nearest PromoterID: | NM_015404 |
| Entrez ID: | 25861 |
| Nearest Unigene: | Hs.93836 |
| Nearest Refseq: | NM_015404 |
| Nearest Ensembl: | ENSG00000095397 |
| Gene Name: | "deafness, autosomal recessive 31" |
| Gene Alias: | CIP98 |
| Gene Description: | whirlin |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.