TSS: Hg 102176.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=6203 |entrez_id=9966 |gc_percent=0.422886 |gene_alias=TL1|TL1A|TNLG1B|VEGI|VEGI192A |gene_description=tumor necrosis factor sup...") |
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{{TSSDetail | {{TSSDetail | ||
|TL1A= | |||
|TNLG1B= | |||
|VEGI= | |||
|VEGI192A= | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance= | |||
|distance_to_tss=6203 | |distance_to_tss=6203 | ||
|end=114786332 | |||
|entrez_id=9966 | |entrez_id=9966 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
| Line 12: | Line 19: | ||
|nearest_refseq=NM_005118 | |nearest_refseq=NM_005118 | ||
|nearest_unigene=Hs.23349 | |nearest_unigene=Hs.23349 | ||
|num_trans=0 | |||
|species=human | |||
|start=114786321 | |||
|strand=- | |||
|tata_box="34(TACCTTAAAAAC,-,0.00),36(CCTTAAAAACAC,+,0.00)" | |tata_box="34(TACCTTAAAAAC,-,0.00),36(CCTTAAAAACAC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102176.1 | |tss_id=hg_102176.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:15, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 6203 |
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| Nearest PromoterID: | NM_001204344 |
| Entrez ID: | 9966 |
| Nearest Unigene: | Hs.23349 |
| Nearest Refseq: | NM_005118 |
| Nearest Ensembl: | ENSG00000181634 |
| Gene Name: | TNFSF15 |
| Gene Alias: | TL1 |
| Gene Description: | tumor necrosis factor superfamily member 15 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "34(TACCTTAAAAAC,-,0.00),36(CCTTAAAAACAC,+,0.00)" |