TSS: Rfmm 99152.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENSMUST00000020212.6)
|annotation=promoter-TSS (NM_029852.2)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS (EM10D2337117,EM10E0962946)
|ccre_description=PLS (EM10D2337117,EM10E0962946)
|chr=chr10
|chr=chr10
|cpg_percent=0.142857
|cpg_percent=0.142857
|detailed_annotation=protein_coding-promoter-TSS (ENSMUST00000020212.6)
|detailed_annotation=-promoter-TSS (NM_029852.2)
|distance=0
|distance=0
|distance_to_tss=-8
|distance_to_tss=29
|end=94524474
|end=94524474
|entrez_id=ENSMUSG00000097164
|entrez_id=Cep83os
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.684211
|gc_percent=0.684211
Line 15: Line 15:
|gene_description=
|gene_description=
|gene_id=67723
|gene_id=67723
|gene_name=centrosomal protein 83, opposite strand
|gene_name=Cep83os
|gene_source=MGI:1914973
|gene_source=MGI:1914973
|gene_symbol=Cep83os
|gene_symbol=Cep83os
|gene_synonyms=4932415G12Rik Ccdc41os1
|gene_synonyms=4932415G12Rik Ccdc41os1
|gene_type=lncRNA
|gene_type=
|hgnc_mgi_id=MGI:1914973
|hgnc_mgi_id=MGI:1914973
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=ENSMUST00000181906.3
|nearest_promoter_id=NR_015524.1
|nearest_refseq=
|nearest_refseq=
|nearest_unigene=ENSMUST00000181906
|nearest_unigene=NR_015524
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|species=mouse
|species=mouse
|start=94524417
|start=94524418
|strand=-
|strand=-
|tata_box=
|tata_box=

Revision as of 23:43, 26 June 2023

Basic information about the TSS


TSS ID:rfmm_99152.1
Species:mouse
Chr:chr10
Start:94524418
End:94524474
Strand:-
Source datasets
Protocol
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS (EM10D2337117,EM10E0962946)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000181906.3:0
AK016525:0
BC067070:0
AK144701:0
AK085032:0
GeneID:67723
HGNC/MGI_ID:MGI:1914973
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:Cep83os
    Gene_symbol:Cep83os
    Gene_synonyms:4932415G12Rik Ccdc41os1
    Gene_source:MGI:1914973



    TATA-Box annotation


    Distance to TSS:29
    Nearest PromoterID:NR_015524.1
    Entrez ID:Cep83os
    Nearest Unigene:NR_015524
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Cep83os
    Gene Alias:
    Gene Type:
    CpG%:0.142857
    GC%:0.684211
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.