TSS: Rfmm 99439.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS (EM10D1183180,EM10E0486701) |chr=chr10 |cpg_percent=0.000000 |detailed_annotation=Intergenic |d...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (XR_871991.3, intron 2 of 8) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EM10D1183180,EM10E0486701) | |ccre_description=dELS (EM10D1183180,EM10E0486701) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=-intron (XR_871991.3, intron 2 of 8) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=2609 | ||
|end=98716004 | |end=98716004 | ||
|entrez_id= | |entrez_id=Gm34346 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.413793 | |gc_percent=0.413793 | ||
| Line 15: | Line 15: | ||
|gene_description= | |gene_description= | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=Gm34346 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=XR_871991.3 | ||
|nearest_refseq= | |nearest_refseq= | ||
|nearest_unigene= | |nearest_unigene=XR_871991 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|species=mouse | |species=mouse | ||
|start= | |start=98715976 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Revision as of 23:47, 26 June 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ||||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | dELS (EM10D1183180,EM10E0486701) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 2609 |
|---|---|
| Nearest PromoterID: | XR_871991.3 |
| Entrez ID: | Gm34346 |
| Nearest Unigene: | XR_871991 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Gm34346 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.000000 |
| GC%: | 0.413793 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |