TSS: Rfhg 10008.1: Difference between revisions

Revision as of 14:41, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_10008.1
Species:	human
Chr:	chr1

Start:	101025851
End:	101025915
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

10

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2204050,EH38E1372062)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BX538249:0
GeneID:	102606465
HGNC/MGI_ID:	HGNC:53720
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC102606465
Gene_symbol:	DPH5-DT
Gene_synonyms:
Gene_source:	HGNC:53720

TATA-Box annotation

Distance to TSS:	37
Nearest PromoterID:	NR_109849
Entrez ID:	102606465
Nearest Unigene:	Hs.593669
Nearest Refseq:	NR_109849
Nearest Ensembl:
Gene Name:	LOC102606465
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.078125
GC%:	0.723077
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:53720
+|methods=STRIPE-seq{{!}}CAGE{{!}}RAMPAGE{{!}}NETCAGE{{!}}SLIC_CAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}C1CAGE
 |nearest_ensembl=
 |nearest_promoter_id=NR_109849
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA597322{{!}}PRJNA401781{{!}}PRJNA4843412{{!}}PRJNA615891{{!}}DRA013844{{!}}PRJNA548673{{!}}PRJDB5282
 |species=human
 |start=101025851
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=BX538249
-|tss_cluster_detected=11
+|tss_cluster_detected=10
 |tss_id=rfhg_10008.1
 |tss_score=1
 |uniprot_id=
 }}