TSS: Rfhg 100106.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:2237 | |hgnc_mgi_id=HGNC:2237 | ||
|methods=CAGE{{!}}TSS_database{{!}}NETCAGE{{!}}oligo_capping{{!}}STRIPE-seq{{!}}RAMPAGE{{!}}SLIC_CAGE{{!}}C1CAGE{{!}}ReCappable-seq | |||
|nearest_ensembl=ENSG00000158623 | |nearest_ensembl=ENSG00000158623 | ||
|nearest_promoter_id=NM_012133 | |nearest_promoter_id=NM_012133 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA597322{{!}}PRJNA615891{{!}}PRJDB5282{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start=130668710 | |start=130668710 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000425248.5 AF157833 AF207598 AK291409 | |transcript_name=ENST00000425248.5 AF157833 AF207598 AK291409 | ||
|tss_cluster_detected=13 | |||
|tss_id=rfhg_100106.1 | |tss_id=rfhg_100106.1 | ||
|tss_id_v3=hg_86162.1 | |tss_id_v3=hg_86162.1 | ||
Revision as of 14:41, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914|PRJNA4843412|DRA013844|PRJNA401781 |PRJNA597322|PRJNA615891|PRJDB5282|PRJNA548673 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|NETCAGE|oligo_capping|STRIPE-seq|RAMPAGE |SLIC_CAGE|C1CAGE|ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 13 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4030940,EH38E2590525) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_012133 |
| Entrez ID: | 26958 |
| Nearest Unigene: | Hs.6421 |
| Nearest Refseq: | NM_012133 |
| Nearest Ensembl: | ENSG00000158623 |
| Gene Name: | COPG2 |
| Gene Alias: | 2-COP|gamma-2-COP |
| Gene Type: | protein-coding |
| CpG%: | 0.133333 |
| GC%: | 0.782609 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.