TSS: Rfhg 100107.1: Difference between revisions

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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:12369
|hgnc_mgi_id=HGNC:12369
|methods=CAGE{{!}}TSS_database
|nearest_ensembl=ENSG00000213265
|nearest_ensembl=ENSG00000213265
|nearest_promoter_id=NM_052933
|nearest_promoter_id=NM_052933
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}EPD
|species=human
|species=human
|start=130686537
|start=130686537

Revision as of 14:41, 6 December 2023

Basic information about the TSS

TSS ID:rfhg_100107.1
Species:human
Chr:chr7
Start:130686537
End:130686548
Strand:-
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000356588.8:0
GeneID:114960
HGNC/MGI_ID:HGNC:12369
UniProt_ID:A0A024R769
Nearer transcript ids and distances:
    Gene_name:TSGA13
    Gene_symbol:TSGA13
    Gene_synonyms:
    Gene_source:HGNC:12369



    TATA-Box annotation

    Distance to TSS:3
    Nearest PromoterID:NM_052933
    Entrez ID:114960
    Nearest Unigene:Hs.592266
    Nearest Refseq:NM_052933
    Nearest Ensembl:ENSG00000213265
    Gene Name:TSGA13
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.500000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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