TSS: Rfhg 100116.1: Difference between revisions

Revision as of 14:41, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_100116.1
Species:	human
Chr:	chr7

Start:	130868935
End:	130868939
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000659385.1:-34
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MIR29A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	7873
Nearest PromoterID:	NR_029503
Entrez ID:	407021
Nearest Unigene:
Nearest Refseq:	NR_029503
Nearest Ensembl:	ENSG00000284032
Gene Name:	MIR29A
Gene Alias:	MIRN29\|MIRN29A\|hsa-mir-29\|hsa-mir-29a\|miRNA29A\|mir-29a
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000284032
 |nearest_promoter_id=NR_029503
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=130868935