TSS: Rfhg 10012.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 21: Line 21:
|gene_type=ncRNA
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:53720
|hgnc_mgi_id=HGNC:53720
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NR_109849
|nearest_promoter_id=NR_109849
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=101082939
|start=101082939

Revision as of 14:41, 6 December 2023

Basic information about the TSS

TSS ID:rfhg_10012.1
Species:human
Chr:chr1
Start:101082939
End:101082948
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AK021551:-485
GeneID:102606465
HGNC/MGI_ID:HGNC:53720
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LOC102606465
    Gene_symbol:DPH5-DT
    Gene_synonyms:
    Gene_source:HGNC:53720



    TATA-Box annotation

    Distance to TSS:57097
    Nearest PromoterID:NR_109849
    Entrez ID:102606465
    Nearest Unigene:Hs.593669
    Nearest Refseq:NR_109849
    Nearest Ensembl:
    Gene Name:LOC102606465
    Gene Alias:-
    Gene Type:ncRNA
    CpG%:0.000000
    GC%:0.700000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_10012.1&oldid=2742434"