TSS: Rfhg 100564.1: Difference between revisions

Revision as of 14:50, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_100564.1
Species:	human
Chr:	chr7

Start:	135317731
End:	135317735
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000636740.1:-1
GeneID:
HGNC/MGI_ID:	HGNC:20602
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	STRA8
Gene_symbol:	SLC23A4P
Gene_synonyms:
Gene_source:	HGNC:20602

TATA-Box annotation

Distance to TSS:	85754
Nearest PromoterID:	NM_182489
Entrez ID:	346673
Nearest Unigene:	Hs.592279
Nearest Refseq:	NM_182489
Nearest Ensembl:	ENSG00000146857
Gene Name:	STRA8
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:20602
+|methods=CAGE
 |nearest_ensembl=ENSG00000146857
 |nearest_promoter_id=NM_182489
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=135317731