TSS: Rfhg 100771.1: Difference between revisions

Revision as of 14:54, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_100771.1
Species:	human
Chr:	chr7

Start:	138773918
End:	138773970
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4037897,EH38E2595186)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_130841.3:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ATP6V0A4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	93
Nearest PromoterID:	NM_130841
Entrez ID:	50617
Nearest Unigene:	Hs.98967
Nearest Refseq:	NM_020632
Nearest Ensembl:	ENSG00000105929
Gene Name:	ATP6V0A4
Gene Alias:	A4\|ATP6N1B\|ATP6N2\|RDRTA2\|RTA1C\|RTADR\|STV1\|VPH1\|VPP2
Gene Type:	protein-coding
CpG%:	0.038462
GC%:	0.641509
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000105929
 |nearest_promoter_id=NM_130841
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=138773918