TSS: Rfhg 100870.1: Difference between revisions

Revision as of 14:56, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_100870.1
Species:	human
Chr:	chr7

Start:	139523668
End:	139523759
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4038524,EH38E2595654)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000422142.7:0
GeneID:	154790
HGNC/MGI_ID:	HGNC:21969
UniProt_ID:	P0C7M8
Nearer transcript ids and distances:

Gene_name:	CLEC2L
Gene_symbol:	CLEC2L
Gene_synonyms:	FLJ32986
Gene_source:	HGNC:21969

TATA-Box annotation

Distance to TSS:	28
Nearest PromoterID:	NM_001080511
Entrez ID:	154790
Nearest Unigene:	Hs.57806
Nearest Refseq:	NM_001080511
Nearest Ensembl:	ENSG00000236279
Gene Name:	CLEC2L
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.153846
GC%:	0.815217
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:21969
+|methods=CAGE
 |nearest_ensembl=ENSG00000236279
 |nearest_promoter_id=NM_001080511
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=139523668