TSS: Rfhg 101222.1: Difference between revisions

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|gene_type=ncRNA
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:12231
|hgnc_mgi_id=HGNC:12231
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NR_162121
|nearest_promoter_id=NR_162121
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=142469522
|start=142469522

Revision as of 15:01, 6 December 2023

Basic information about the TSS


TSS ID:rfhg_101222.1
Species:human
Chr:chr7
Start:142469522
End:142469553
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000390371.3:0
GeneID:
HGNC/MGI_ID:HGNC:12231
UniProt_ID:A0A0A6YYG2
Nearer transcript ids and distances:
    Gene_name:MIR11400
    Gene_symbol:TRBV6-6
    Gene_synonyms:TCRBV13S6A2T TCRBV6S6 TRBV66
    Gene_source:HGNC:12231



    TATA-Box annotation


    Distance to TSS:-4990
    Nearest PromoterID:NR_162121
    Entrez ID:113839523
    Nearest Unigene:
    Nearest Refseq:NR_162121
    Nearest Ensembl:
    Gene Name:MIR11400
    Gene Alias:-
    Gene Type:ncRNA
    CpG%:0.000000
    GC%:0.437500
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.