TSS: Rfhg 10124.1: Difference between revisions

Revision as of 15:01, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_10124.1
Species:	human
Chr:	chr1

Start:	104068321
End:	104068345
Strand:	+

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC100129138
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-4690
Nearest PromoterID:	NR_033990
Entrez ID:	100129138
Nearest Unigene:	Hs.514487
Nearest Refseq:	NR_033990
Nearest Ensembl:	ENSG00000215869
Gene Name:	LOC100129138
Gene Alias:	-
Gene Type:	pseudo
CpG%:	0.000000
GC%:	0.440000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=pseudo
 |hgnc_mgi_id=
+|methods=NETCAGE
 |nearest_ensembl=ENSG00000215869
 |nearest_promoter_id=NR_033990
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412
 |species=human
 |start=104068321