TSS: Rfhg 101307.1: Difference between revisions

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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:12205
|hgnc_mgi_id=HGNC:12205
|methods=CAGE
|nearest_ensembl=ENSG00000270672
|nearest_ensembl=ENSG00000270672
|nearest_promoter_id=NM_001190487
|nearest_promoter_id=NM_001190487
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=142670735
|start=142670735

Revision as of 15:02, 6 December 2023

Basic information about the TSS

TSS ID:rfhg_101307.1
Species:human
Chr:chr7
Start:142670735
End:142670763
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000390398.3:0
GeneID:
HGNC/MGI_ID:HGNC:12205
UniProt_ID:A0A075B6N4
Nearer transcript ids and distances:
    Gene_name:MTRNR2L6
    Gene_symbol:TRBV25-1
    Gene_synonyms:TCRBV11S1A1T TCRBV25S1 TRBV251
    Gene_source:HGNC:12205



    TATA-Box annotation

    Distance to TSS:4450
    Nearest PromoterID:NM_001190487
    Entrez ID:100463482
    Nearest Unigene:
    Nearest Refseq:NM_001190487
    Nearest Ensembl:ENSG00000270672
    Gene Name:MTRNR2L6
    Gene Alias:HN6
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.551724
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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