TSS: Hg 102360.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=279 |entrez_id=2681 |gc_percent=0.781095 |gene_alias=GGTA|GGTA1|GLYT2|a1/3GTP |gene_description="glycoprotein, alpha-galactosyl...") |
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{{TSSDetail | {{TSSDetail | ||
|GGTA1= | |||
|GLYT2= | |||
|a1/3GTP= | |||
|all_trans=ENST00000481534.5:-4 ENST00000495328.5:-4 AF378121:-4 AF378123:-4 AF378122:-4 ENST00000373793.3:-63 BC045756:-112 ENST00000481799.5:-274 NR_003191:-274 NR_045211:-274 | |||
|chr=chr9 | |||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=-4 | |||
|distance_to_tss=279 | |distance_to_tss=279 | ||
|end=121499753 | |||
|entrez_id=2681 | |entrez_id=2681 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
|gene_alias=GGTA|GGTA1|GLYT2|a1/3GTP | |gene_alias=GGTA|GGTA1|GLYT2|a1/3GTP | ||
|gene_description="glycoprotein, alpha-galactosyltransferase 1 pseudogene" | |gene_description="glycoprotein, alpha-galactosyltransferase 1 pseudogene" | ||
|gene_name=GGTA1P | |gene_id=2681 | ||
|gene_name="glycoprotein, alpha-galactosyltransferase 1 pseudogene; glycoprotein, alpha-galactosyltransferase 2, pseudogene" | |||
|gene_source=HGNC:4253 HGNC:4254 | |||
|gene_symbol=GGTA1P GGTA2P | |||
|gene_synonyms=HGT2 | |||
|gene_type=pseudo | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:4253 HGNC:4254 | |||
|nearest_ensembl=ENSG00000204136 | |nearest_ensembl=ENSG00000204136 | ||
|nearest_promoter_id=NR_045211 | |nearest_promoter_id=NR_045211 | ||
|nearest_refseq=NR_003191 | |nearest_refseq=NR_003191 | ||
|nearest_unigene=Hs.97469 | |nearest_unigene=Hs.97469 | ||
|num_trans=10 | |||
|species=human | |||
|start=121499742 | |||
|strand=- | |||
|transcript_name=ENST00000481534.5 ENST00000495328.5 AF378121 AF378123 AF378122 | |||
|tss_classification=yes | |||
|tss_id=hg_102360.1 | |tss_id=hg_102360.1 | ||
|tss_score=1 | |||
|uniprot_id= | |||
}} | }} | ||
Revision as of 19:23, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 279 |
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| Nearest PromoterID: | NR_045211 |
| Entrez ID: | 2681 |
| Nearest Unigene: | Hs.97469 |
| Nearest Refseq: | NR_003191 |
| Nearest Ensembl: | ENSG00000204136 |
| Gene Name: | "glycoprotein, alpha-galactosyltransferase 1 pseudogene; glycoprotein, alpha-galactosyltransferase 2, pseudogene" |
| Gene Alias: | GGTA |
| Gene Description: | "glycoprotein, alpha-galactosyltransferase 1 pseudogene" |
| Gene Type: | pseudo |
| CpG%: | 0.145 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.