TSS: Rfhg 101545.1: Difference between revisions

Revision as of 15:06, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_101545.1
Species:	human
Chr:	chr7

Start:	143132070
End:	143132083
Strand:	+

Source datasets

FANTOM5|EPD|RAMPAGE

Protocol

CAGE|TSS_database|RAMPAGE

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4041686,EH38E2597968)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000291009.4:0 BC010950:0 AK312227:0 Y10179:0 BC010951:0
GeneID:	5304
HGNC/MGI_ID:	HGNC:8993
UniProt_ID:	P12273
Nearer transcript ids and distances:

Gene_name:	PIP
Gene_symbol:	PIP
Gene_synonyms:	BRST-2 GCDFP-15 GCDFP15 GPIP4 SABP
Gene_source:	HGNC:8993

TATA-Box annotation

Distance to TSS:	-1
Nearest PromoterID:	NM_002652
Entrez ID:	5304
Nearest Unigene:	Hs.99949
Nearest Refseq:	NM_002652
Nearest Ensembl:	ENSG00000159763
Gene Name:	PIP
Gene Alias:	GCDFP-15\|GCDFP15\|GPIP4
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:8993
+|methods=CAGE{{!}}TSS_database{{!}}RAMPAGE
 |nearest_ensembl=ENSG00000159763
 |nearest_promoter_id=NM_002652
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}RAMPAGE
 |species=human
 |start=143132070