TSS: Rfhg 101640.1: Difference between revisions

Revision as of 15:07, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_101640.1
Species:	human
Chr:	chr7

Start:	143836702
End:	143836730
Strand:	-

Source datasets

PRJDB5282|PRJNA4843412|DRA013844

Protocol

C1CAGE|NETCAGE|CAGE

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000491047.5:0 ENST00000468266.1:0 ENST00000494978.5:0 BC041464:0
GeneID:	154761
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC154761
Gene_symbol:	LOC154761
Gene_synonyms:
Gene_source:	EntrezGene:154761

TATA-Box annotation

Distance to TSS:	1
Nearest PromoterID:	NR_015421
Entrez ID:	154761
Nearest Unigene:	Hs.716689
Nearest Refseq:	NR_015421
Nearest Ensembl:	ENSG00000253882
Gene Name:	LOC154761
Gene Alias:	-
Gene Type:	pseudo
CpG%:	0.178571
GC%:	0.827586
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=pseudo
 |hgnc_mgi_id=
+|methods=C1CAGE{{!}}NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000253882
 |nearest_promoter_id=NR_015421
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=143836702
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000491047.5 ENST00000468266.1 ENST00000494978.5 BC041464
-|tss_cluster_detected=5
+|tss_cluster_detected=3
 |tss_id=rfhg_101640.1
 |tss_score=1
 |uniprot_id=
 }}