TSS: Rfhg 101654.1: Difference between revisions

Revision as of 15:08, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_101654.1
Species:	human
Chr:	chr7

Start:	144256239
End:	144256256
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4042316,EH38E2598407)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000641121.1:0 ENST00000498397.1:0
GeneID:	401428
HGNC/MGI_ID:	HGNC:15413
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	OR2A7
Gene_symbol:	OR2A20P
Gene_synonyms:
Gene_source:	HGNC:15413

TATA-Box annotation

Distance to TSS:	3381
Nearest PromoterID:	NM_001005328
Entrez ID:	401427
Nearest Unigene:	Hs.658609
Nearest Refseq:	NM_001005328
Nearest Ensembl:	ENSG00000243896
Gene Name:	OR2A7
Gene Alias:	HSDJ0798C17\|OR2A21
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:15413
+|methods=CAGE
 |nearest_ensembl=ENSG00000243896
 |nearest_promoter_id=NM_001005328
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=144256239