TSS: Rfhg 101655.1: Difference between revisions

Revision as of 15:08, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_101655.1
Species:	human
Chr:	chr7

Start:	144269212
End:	144269212
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000487179.1:-76
GeneID:	100142659
HGNC/MGI_ID:	HGNC:37294
UniProt_ID:	P0CG41
Nearer transcript ids and distances:

Gene_name:	CTAGE4
Gene_symbol:	CTAGE8
Gene_synonyms:
Gene_source:	HGNC:37294

TATA-Box annotation

Distance to TSS:	87
Nearest PromoterID:	NM_198495
Entrez ID:	100128553
Nearest Unigene:	Hs.645204
Nearest Refseq:	NM_198495
Nearest Ensembl:	ENSG00000225932
Gene Name:	CTAGE4
Gene Alias:	cTAGE-4
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:37294
+|methods=TSS_database
 |nearest_ensembl=ENSG00000225932
 |nearest_promoter_id=NM_198495
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=144269212