TSS: Rfhg 101660.1: Difference between revisions

Revision as of 15:08, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_101660.1
Species:	human
Chr:	chr7

Start:	144410203
End:	144410203
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000467773.1:-24 ENST00000483238.5:-24
GeneID:	135935
HGNC/MGI_ID:	HGNC:22448
UniProt_ID:	O60393
Nearer transcript ids and distances:

Gene_name:	NOBOX
Gene_symbol:	NOBOX
Gene_synonyms:	OG2 Og2x
Gene_source:	HGNC:22448

TATA-Box annotation

Distance to TSS:	24
Nearest PromoterID:	NM_001080413
Entrez ID:	135935
Nearest Unigene:	Hs.558628
Nearest Refseq:	NM_001080413
Nearest Ensembl:	ENSG00000106410
Gene Name:	NOBOX
Gene Alias:	OG-2\|OG2\|OG2X\|POF5\|TCAG_12042
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:22448
+|methods=TSS_database
 |nearest_ensembl=ENSG00000106410
 |nearest_promoter_id=NM_001080413
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=144410203