TSS: Rfhg 105717.1: Difference between revisions

Revision as of 16:22, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_105717.1
Species:	human
Chr:	chr8

Start:	37738011
End:	37738012
Strand:	+

Source datasets

DRA013844

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4083185,EH38E2624866)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF371844:-58 MA607421:-58
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC102723701
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-585
Nearest PromoterID:	NR_125821
Entrez ID:	102723701
Nearest Unigene:	Hs.588388
Nearest Refseq:	NR_125821
Nearest Ensembl:	ENSG00000183154
Gene Name:	LOC102723701
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000183154
 |nearest_promoter_id=NR_125821
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=DRA013844
 |species=human
 |start=37738011