TSS: Rfhg 107331.1: Difference between revisions

Revision as of 16:51, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_107331.1
TSS ID(Version3):	hg_89169.1
Species:	human
Chr:	chr8

Start:	66113345
End:	66113387
Strand:	+

Source datasets

FANTOM5|PRJNA615891|PRJNA548673

Protocol

CAGE|SLIC_CAGE|ReCappable-seq

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4101864,EH38E2636910)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000663048.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TRIM55
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-13763
Nearest PromoterID:	NM_184086
Entrez ID:	84675
Nearest Unigene:	Hs.85524
Nearest Refseq:	NM_033058
Nearest Ensembl:	ENSG00000147573
Gene Name:	TRIM55
Gene Alias:	MURF-2\|RNF29\|muRF2
Gene Type:	protein-coding
CpG%:	0.119048
GC%:	0.581395
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}SLIC_CAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000147573
 |nearest_promoter_id=NM_184086
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA615891{{!}}PRJNA548673
 |species=human
 |start=66113345