TSS: Rfhg 108715.1: Difference between revisions

Revision as of 17:17, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_108715.1
TSS ID(Version3):	hg_93953.1
Species:	human
Chr:	chr8

Start:	92877635
End:	92877640
Strand:	-

Source datasets

FANTOM5|PRJNA401781

Protocol

CAGE|RAMPAGE|oligo_capping

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4119787,EH38E2647520)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000504861.2:0 AK128161:0
GeneID:	441369
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TRIQK
Gene_symbol:	FLJ46284
Gene_synonyms:
Gene_source:	EntrezGene:441369

TATA-Box annotation

Distance to TSS:	87952
Nearest PromoterID:	NM_001191036
Entrez ID:	286144
Nearest Unigene:	Hs.440643
Nearest Refseq:	NM_001171795
Nearest Ensembl:	ENSG00000205133
Gene Name:	TRIQK
Gene Alias:	C8orf83\|PRO0845\|UPF0599
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}RAMPAGE{{!}}oligo_capping
 |nearest_ensembl=ENSG00000205133
 |nearest_promoter_id=NM_001191036
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA401781
 |species=human
 |start=92877635