TSS: Rfhg 108780.1: Difference between revisions

Revision as of 17:18, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_108780.1
Species:	human
Chr:	chr8

Start:	94436928
End:	94436960
Strand:	-

Source datasets

PRJNA615891|PRJNA401781|PRJNA548673

Protocol

SLIC_CAGE|TIF-seq2|CAGE|oligo_capping

TSS cluster detected^*

5

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4121136,EH38E2648455)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000517506.2:0 ENST00000481490.3:0
GeneID:	100861412
HGNC/MGI_ID:	HGNC:43653
UniProt_ID:	J3KSW4 O95073
Nearer transcript ids and distances:

Gene_name:	FSBP
Gene_symbol:	FSBP
Gene_synonyms:
Gene_source:	HGNC:43653

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_001256141
Entrez ID:	100861412
Nearest Unigene:	Hs.30561
Nearest Refseq:	NM_001256141
Nearest Ensembl:	ENSG00000265817
Gene Name:	FSBP
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.393939
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:43653
+|methods=SLIC_CAGE{{!}}TIF-seq2{{!}}CAGE{{!}}oligo_capping
 |nearest_ensembl=ENSG00000265817
 |nearest_promoter_id=NM_001256141
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673
 |species=human
 |start=94436928
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000517506.2 ENST00000481490.3
-|tss_cluster_detected=8
+|tss_cluster_detected=5
 |tss_id=rfhg_108780.1
 |tss_score=1
 |uniprot_id=J3KSW4 O95073
 }}