TSS: Rfhg 109469.1: Difference between revisions

Revision as of 17:31, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_109469.1
Species:	human
Chr:	chr8

Start:	102529108
End:	102529120
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4128259,EH38E2653611)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000523572.1:-353
GeneID:	107986898
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ODF1
Gene_symbol:	LINC03047
Gene_synonyms:	KB-1980E6.3
Gene_source:	EntrezGene:107986898

TATA-Box annotation

Distance to TSS:	-22475
Nearest PromoterID:	NM_024410
Entrez ID:	4956
Nearest Unigene:	Hs.159274
Nearest Refseq:	NM_024410
Nearest Ensembl:	ENSG00000155087
Gene Name:	ODF1
Gene Alias:	CT133\|HSPB10\|ODF\|ODF2\|ODF27\|ODFP\|ODFPG\|ODFPGA\|ODFPGB\|RT7\|SODF
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.384615
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000155087
 |nearest_promoter_id=NM_024410
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=102529108