TSS: Rfhg 109574.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 21: Line 21:
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000164929
|nearest_ensembl=ENSG00000164929
|nearest_promoter_id=NM_001024372
|nearest_promoter_id=NM_001024372
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=103139015
|start=103139015

Revision as of 17:33, 6 December 2023

Basic information about the TSS

TSS ID:rfhg_109574.1
Species:human
Chr:chr8
Start:103139015
End:103139034
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS (EH38D4128944,EH38E2654189)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:BAALC
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:-1701
    Nearest PromoterID:NM_001024372
    Entrez ID:79870
    Nearest Unigene:Hs.533446
    Nearest Refseq:NM_024812
    Nearest Ensembl:ENSG00000164929
    Gene Name:BAALC
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.052632
    GC%:0.500000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_109574.1&oldid=2752937"