TSS: Rfhg 112595.1: Difference between revisions

Revision as of 18:28, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_112595.1
Species:	human
Chr:	chr8

Start:	144266542
End:	144266542
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4162686,EH38E2676075)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000567180.3:-89
GeneID:	642658
HGNC/MGI_ID:	HGNC:32322
UniProt_ID:	Q7RTU7
Nearer transcript ids and distances:

Gene_name:	SCX
Gene_symbol:	SCX
Gene_synonyms:	bHLHa41 bHLHa48
Gene_source:	HGNC:32322

TATA-Box annotation

Distance to TSS:	89
Nearest PromoterID:	NM_001080514
Entrez ID:	642658
Nearest Unigene:	Hs.553250
Nearest Refseq:	NM_001008271
Nearest Ensembl:	ENSG00000260428
Gene Name:	SCX
Gene Alias:	SCXA\|SCXB\|bHLHa48
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:32322
+|methods=TSS_database
 |nearest_ensembl=ENSG00000260428
 |nearest_promoter_id=NM_001080514
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=144266542