TSS: Rfhg 113285.1: Difference between revisions

Revision as of 18:41, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_113285.1
Species:	human
Chr:	chr9

Start:	6757184
End:	6757204
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4168949,EH38E2680475)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF355193:-239 MA590770:-239
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	KDM4C
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-156
Nearest PromoterID:	NM_001354001
Entrez ID:	23081
Nearest Unigene:	Hs.709425
Nearest Refseq:	NM_015061
Nearest Ensembl:	ENSG00000107077
Gene Name:	KDM4C
Gene Alias:	GASC1\|JHDM3C\|JMJD2C\|TDRD14C
Gene Type:	protein-coding
CpG%:	0.050000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000107077
 |nearest_promoter_id=NM_001354001
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=6757184