TSS: Rfhg 114058.1: Difference between revisions

Revision as of 18:56, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_114058.1
Species:	human
Chr:	chr9

Start:	21995304
End:	21995359
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4179862,EH38E2687292)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001363763.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CDKN2A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-7
Nearest PromoterID:	NM_001363763
Entrez ID:	1029
Nearest Unigene:	Hs.512599
Nearest Refseq:	NM_000077
Nearest Ensembl:	ENSG00000147889
Gene Name:	CDKN2A
Gene Alias:	ARF\|CDK4I\|CDKN2\|CMM2\|INK4\|INK4A\|MLM\|MTS-1\|MTS1\|P14\|P14ARF\|P16\|P16-INK4A\|P16INK4\|P16INK4A\|P19\|P19ARF\|TP16
Gene Type:	protein-coding
CpG%:	0.109091
GC%:	0.642857
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000147889
 |nearest_promoter_id=NM_001363763
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=21995304