TSS: Rfhg 114316.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 21: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:19102 | |hgnc_mgi_id=HGNC:19102 | ||
|methods=NETCAGE{{!}}CAGE | |||
|nearest_ensembl=ENSG00000107201 | |nearest_ensembl=ENSG00000107201 | ||
|nearest_promoter_id=NM_014314 | |nearest_promoter_id=NM_014314 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start=32526187 | |start=32526187 | ||
| Line 32: | Line 34: | ||
|tata_box=34(CGGCTTTAAAGC,-,0.00) | |tata_box=34(CGGCTTTAAAGC,-,0.00) | ||
|transcript_name=ENST00000379883.3 ENST00000379868.6 ENST00000679771.1 ENST00000680733.1 ENST00000679859.1 BC070029 AK315040 AK301678 BX647917 | |transcript_name=ENST00000379883.3 ENST00000379868.6 ENST00000679771.1 ENST00000680733.1 ENST00000679859.1 BC070029 AK315040 AK301678 BX647917 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_114316.1 | |tss_id=rfhg_114316.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A2A376 B4DWT9 O95786 | |uniprot_id=A2A376 B4DWT9 O95786 | ||
}} | }} | ||
Latest revision as of 19:00, 6 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | PRJNA4843412|DRA013844 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4185364,EH38E2690005) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -29 |
|---|---|
| Nearest PromoterID: | NM_014314 |
| Entrez ID: | 23586 |
| Nearest Unigene: | Hs.190622 |
| Nearest Refseq: | NM_014314 |
| Nearest Ensembl: | ENSG00000107201 |
| Gene Name: | DDX58 |
| Gene Alias: | RIG-I|RIG1|RIGI|RLR-1|SGMRT2 |
| Gene Description: | DExD/H-box helicase 58 |
| Gene Type: | protein-coding |
| CpG%: | 0.078947 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): | 34(CGGCTTTAAAGC,-,0.00) |
TSS expression
Expression data not found.