TSS: Rfhg 114317.1: Difference between revisions

Revision as of 19:00, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_114317.1
Species:	human
Chr:	chr9

Start:	32526302
End:	32526348
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4185364,EH38E2690005)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AF038963:0 BC107731:0
GeneID:	23586
HGNC/MGI_ID:	HGNC:19102
UniProt_ID:	Q3B797
Nearer transcript ids and distances:

Gene_name:	DDX58
Gene_symbol:	RIGI
Gene_synonyms:	DKFZp434J1111 FLJ13599 RIG-1 RIG-I RIG1
Gene_source:	HGNC:19102

TATA-Box annotation

Distance to TSS:	-129
Nearest PromoterID:	NM_014314
Entrez ID:	23586
Nearest Unigene:	Hs.190622
Nearest Refseq:	NM_014314
Nearest Ensembl:	ENSG00000107201
Gene Name:	DDX58
Gene Alias:	RIG-I\|RIG1\|RIGI\|RLR-1\|SGMRT2
Gene Type:	protein-coding
CpG%:	0.021739
GC%:	0.340426
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:19102
+|methods=CAGE
 |nearest_ensembl=ENSG00000107201
 |nearest_promoter_id=NM_014314
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=32526302