TSS: Rfhg 114692.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23215 | |hgnc_mgi_id=HGNC:23215 | ||
|methods=NETCAGE{{!}}CAGE{{!}}RAMPAGE{{!}}SLIC_CAGE{{!}}ReCappable-seq{{!}}C1CAGE | |||
|nearest_ensembl=ENSG00000165282 | |nearest_ensembl=ENSG00000165282 | ||
|nearest_promoter_id=NM_152850 | |nearest_promoter_id=NM_152850 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJDB5282 | |||
|species=human | |species=human | ||
|start=35096558 | |start=35096558 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENST00000378617.4 ENST00000361778.6 ENST00000465745.6 ENST00000492770.1 AK074064 | |transcript_name=ENST00000378617.4 ENST00000361778.6 ENST00000465745.6 ENST00000492770.1 AK074064 | ||
|tss_cluster_detected= | |tss_cluster_detected=8 | ||
|tss_id=rfhg_114692.1 | |tss_id=rfhg_114692.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q8TEQ8 | |uniprot_id=Q8TEQ8 | ||
}} | }} | ||
Latest revision as of 19:07, 6 December 2023
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844|PRJNA401781|PRJNA615891|PRJNA548673 |PRJDB5282 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE|RAMPAGE|SLIC_CAGE|ReCappable-seq|C1CAGE | |||||||||||||
| TSS cluster detected* | 8 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4187535,EH38E2691576) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_152850 |
| Entrez ID: | 84720 |
| Nearest Unigene: | Hs.522099 |
| Nearest Refseq: | NM_032634 |
| Nearest Ensembl: | ENSG00000165282 |
| Gene Name: | PIGO |
| Gene Alias: | HPMRS2 |
| Gene Description: | phosphatidylinositol glycan anchor biosynthesis class O |
| Gene Type: | protein-coding |
| CpG%: | 0.109756 |
| GC%: | 0.710843 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.