TSS: Rfhg 114700.1: Difference between revisions

Latest revision as of 19:07, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_114700.1
TSS ID(Version3):	hg_100573.1 hg_100574.1
Species:	human
Chr:	chr9

Start:	35111543
End:	35111603
Strand:	-

Source datasets

FANTOM5|DRA013844|PRJNA4843412

Protocol

CAGE|NETCAGE

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4187556,EH38E2691592)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000603301.5 ENST00000378561.5 AB040972
Distance:	0
GeneID:	80256
HGNC/MGI_ID:	HGNC:25666
UniProt_ID:	Q7L5A3

Gene_name:	FAM214B
Gene_symbol:	ATOSB
Gene_synonyms:	FLJ11560 bA182N22.6
Gene_source:	HGNC:25666

TATA-Box annotation

Distance to TSS:	-121
Nearest PromoterID:	NM_001317991
Entrez ID:	80256
Nearest Unigene:	Hs.301696
Nearest Refseq:	NM_025182
Nearest Ensembl:	ENSG00000005238
Gene Name:	FAM214B
Gene Alias:	KIAA1539
Gene Description:	family with sequence similarity 214 member B
Gene Type:	protein-coding
CpG%:	0.033333
GC%:	0.672131
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:25666
+|methods=CAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000005238
 |nearest_promoter_id=NM_001317991
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA013844{{!}}PRJNA4843412
 |species=human
 |start=35111543
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000603301.5 ENST00000378561.5 AB040972
+|tss_cluster_detected=3
 |tss_id=rfhg_114700.1
 |tss_id_v3=hg_100573.1;hg_100574.1