TSS: Rfhg 114781.1: Difference between revisions
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|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:10031 | |hgnc_mgi_id=HGNC:10031 | ||
|methods=CAGE{{!}}RAMPAGE{{!}}C1CAGE{{!}}NETCAGE{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}oligo_capping{{!}}STRIPE-seq{{!}}ReCappable-seq | |||
|nearest_ensembl=ENSG00000269900 | |nearest_ensembl=ENSG00000269900 | ||
|nearest_promoter_id=NR_003051 | |nearest_promoter_id=NR_003051 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914{{!}}ENCODE{{!}}RAMPAGE{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA401781{{!}}PRJNA597322 | |||
|species=human | |species=human | ||
|start=35657908 | |start=35657908 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000602361.1 ENST00000363046.1 | |transcript_name=ENST00000602361.1 ENST00000363046.1 | ||
|tss_cluster_detected=15 | |||
|tss_id=rfhg_114781.1 | |tss_id=rfhg_114781.1 | ||
|tss_id_v3=hg_100601.1 | |tss_id_v3=hg_100601.1 | ||
Latest revision as of 19:09, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914|ENCODE|RAMPAGE|PRJDB5282|PRJNA4843412 |DRA013844|PRJNA615891|PRJNA548673|PRJNA401781|PRJNA597322 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|RAMPAGE|C1CAGE|NETCAGE|TIF-seq2|SLIC_CAGE |oligo_capping|STRIPE-seq|ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 15 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4188016,EH38E2691927) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 48 |
|---|---|
| Nearest PromoterID: | NR_003051 |
| Entrez ID: | 6023 |
| Nearest Unigene: | Hs.587502 |
| Nearest Refseq: | NR_003051 |
| Nearest Ensembl: | ENSG00000269900 |
| Gene Name: | RMRP |
| Gene Alias: | CHH|NME1|RMRPR|RRP2 |
| Gene Description: | RNA component of mitochondrial RNA processing endoribonuclease |
| Gene Type: | ncRNA |
| CpG%: | 0.056452 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.