TSS: Rfhg 115153.1: Difference between revisions

Latest revision as of 19:15, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_115153.1
Species:	human
Chr:	chr9

Start:	38620534
End:	38620620
Strand:	-

Source datasets

PRJNA548673

Protocol

CAGE|ReCappable-seq

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4190827,EH38E2694035)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000399703.6
Distance:	0
GeneID:	253650
HGNC/MGI_ID:	HGNC:23643
UniProt_ID:	Q8IVF6

Gene_name:	ANKRD18A
Gene_symbol:	ANKRD18A
Gene_synonyms:	FLJ35740 KIAA2015
Gene_source:	HGNC:23643

TATA-Box annotation

Distance to TSS:	19
Nearest PromoterID:	NM_001331100
Entrez ID:	253650
Nearest Unigene:	Hs.644630
Nearest Refseq:	NM_147195
Nearest Ensembl:	ENSG00000180071
Gene Name:	ANKRD18A
Gene Alias:	-
Gene Description:	ankyrin repeat domain 18A
Gene Type:	protein-coding
CpG%:	0.104651
GC%:	0.643678
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:23643
+|methods=CAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000180071
 |nearest_promoter_id=NM_001331100
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA548673
 |species=human
 |start=38620534
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000399703.6
-|tss_cluster_detected=3
+|tss_cluster_detected=2
 |tss_id=rfhg_115153.1
 |tss_score=1
 |uniprot_id=Q8IVF6
 }}