TSS: Rfhg 115207.1: Difference between revisions

Revision as of 19:16, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_115207.1
TSS ID(Version3):	hg_100792.1 hg_100793.1
Species:	human
Chr:	chr9

Start:	62802627
End:	62802713
Strand:	-

Source datasets

FANTOM5|DRA000914|PRJNA4843412|DRA013844

Protocol

CAGE|NETCAGE

TSS cluster detected^*

4

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4191591,EH38E2694363)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC065527:0
GeneID:	107987020
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC01410
Gene_symbol:	LOC107987020
Gene_synonyms:
Gene_source:	EntrezGene:107987020

TATA-Box annotation

Distance to TSS:	1205
Nearest PromoterID:	NR_121647
Entrez ID:	103352539
Nearest Unigene:	Hs.351215
Nearest Refseq:	NR_121647
Nearest Ensembl:	ENSG00000238113
Gene Name:	LINC01410
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.081395
GC%:	0.747126
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000238113
 |nearest_promoter_id=NR_121647
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA000914{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=62802627
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=BC065527
+|tss_cluster_detected=4
 |tss_id=rfhg_115207.1
 |tss_id_v3=hg_100792.1;hg_100793.1